Index

A

analyze_repl() (in module sa.methods)

C

combine() (in module sa.utilities) compute_distance() (in module sa.methods)

correct_outlier_dec() (in module sa.methods)

D

data2np() (in module sa.utilities) decompose_manifold() (in module sa.methods) decompose_MDS() (in module sa.methods) decompose_PCA() (in module sa.methods)

detect_novelties_GMM() (in module sa.methods) detect_novelties_SVM() (in module sa.methods) detect_outliers() (in module sa.methods)

F

filter_attribute() (in module sa.utilities) fit() (sa.mds.MDS method) fit_transform() (sa.mds.MDS method)

fss() (in module sa.analysis) fss_post_cluster() (in module sa.analysis) fss_wrapper() (in module sa.methods)

G

get_params() (sa.mds.MDS method)

K

k_means() (in module sa.methods)

M

MDS (class in sa.mds)

N

normalize() (in module sa.methods)

O

outlier2cluster() (in module sa.methods)

P

plates2dict() (in module sa.utilities) plot_hist_coll() (in module sa.plotting) plot_hist_mean_MT_WT__WT_WT_distance() (in module sa.plotting) plot_hist_mean_MT_WT_distance() (in module sa.plotting) plot_hist_signif_MT_WT() (in module sa.plotting) plot_hist_with_norm_fit() (in module sa.plotting)

plot_hist_WT_WT_distance() (in module sa.plotting) plot_pca_projection() (in module sa.plotting) plot_plate_by_mean_well_distance() (in module sa.plotting) plot_silhouette() (in module sa.plotting) pool_adjacent_violators() (in module sa.mds) pp_plate_info() (in module sa.utilities)

R

read() (in module sa.utilities)

read_repl() (in module sa.utilities)

S

sa (module) sa.analysis (module) sa.mds (module) sa.methods (module) sa.plotting (module) sa.utilities (module) set_params() (sa.mds.MDS method) silhouette() (in module sa.methods) smacof() (in module sa.mds)

split_WT_MT() (in module sa.utilities) standardize() (in module sa.methods) std_prep() (in module sa.utilities) strains_1p_WT() (in module sa.analysis) strains_coll() (in module sa.analysis) strains_Np_MT() (in module sa.analysis) strains_Np_novelty_MT() (in module sa.analysis) strains_Np_WT() (in module sa.analysis) strains_repl() (in module sa.analysis)

T

to_csv() (in module sa.utilities)

to_orange() (in module sa.utilities)