Index

A

algorithm (nimfa.models.mf_fit.Mf_fit attribute) all() (in module nimfa.utils.linalg) any() (in module nimfa.utils.linalg) argmax() (in module nimfa.utils.linalg)

argmin() (in module nimfa.utils.linalg) args (nimfa.utils.utils.MFError attribute) assign_labels() (in module nimfa.examples.gene_func_prediction)

B

basis() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.mf_fit.Mf_fit method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) (nimfa.models.smf.Smf method) Bd (class in nimfa.methods.factorization.bd)

Bmf (class in nimfa.methods.factorization.bmf)

C

callback (nimfa.models.nmf.Nmf attribute) choose() (in module nimfa.utils.linalg) coef() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.mf_fit.Mf_fit method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) (nimfa.models.smf.Smf method) compute_correlations() (in module nimfa.examples.gene_func_prediction) conn() (nimfa.methods.factorization.nmf.Nmf method)

connectivity() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) consensus() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) coph_cor() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) count() (in module nimfa.utils.linalg) count_gauss() (nimfa.methods.factorization.sepnmf.SepNmf method)

D

diff() (in module nimfa.utils.linalg) dim() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) dispersion() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) distance() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.mf_fit.Mf_fit method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) (nimfa.models.smf.Smf method)

div() (nimfa.methods.factorization.nmf.Nmf method) divergence() (nimfa.methods.factorization.nmf.Nmf method) dot() (in module nimfa.utils.linalg)

E

elop() (in module nimfa.utils.linalg) entropy() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) estimate_rank() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method)

euclidean() (nimfa.methods.factorization.nmf.Nmf method) evar() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method)

F

factorize() (in module nimfa.examples.cbcl_images) (in module nimfa.examples.documents) (in module nimfa.examples.gene_func_prediction) (in module nimfa.examples.orl_images) (in module nimfa.examples.recommendations) (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) final_obj (nimfa.models.nmf.Nmf attribute) find() (in module nimfa.utils.linalg) fit (nimfa.models.mf_fit.Mf_fit attribute) fit() (nimfa.models.mf_fit.Mf_fit method)

fitted() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.mf_fit.Mf_fit method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) (nimfa.models.smf.Smf method) Fixed (class in nimfa.methods.seeding.fixed) fro() (nimfa.methods.factorization.nmf.Nmf method) fro_error() (nimfa.methods.factorization.snmf.Snmf method)

G

gen_dense() (nimfa.methods.seeding.random.Random method) gen_sparse() (nimfa.methods.seeding.random.Random method)

get_error() (nimfa.models.mf_track.Mf_track method) get_factor() (nimfa.models.mf_track.Mf_track method)

H

H (nimfa.models.nmf_mm.Nmf_mm attribute) (nimfa.models.nmf_ns.Nmf_ns attribute) (nimfa.models.nmf_std.Nmf_std attribute) H1 (nimfa.models.nmf_mm.Nmf_mm attribute)

hstack() (in module nimfa.utils.linalg)

I

Icm (class in nimfa.methods.factorization.icm) inf_norm() (in module nimfa.utils.linalg) init_sparse() (nimfa.methods.seeding.nndsvd.Nndsvd method)

initialize() (nimfa.methods.seeding.fixed.Fixed method) (nimfa.methods.seeding.nndsvd.Nndsvd method) (nimfa.methods.seeding.random.Random method) (nimfa.methods.seeding.random_c.Random_c method) (nimfa.methods.seeding.random_vcol.Random_vcol method) inv_svd() (in module nimfa.utils.linalg) is_satisfied() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method)

L

Lfnmf (class in nimfa.methods.factorization.lfnmf) list_mf_methods() (in module nimfa.methods)

list_seeding_methods() (in module nimfa.methods) Lsnmf (class in nimfa.methods.factorization.lsnmf)

M

max() (in module nimfa.utils.linalg) max_iter (nimfa.models.nmf.Nmf attribute) message (nimfa.utils.utils.MFError attribute) method (nimfa.models.nmf.Nmf attribute) Mf_fit (class in nimfa.models.mf_fit)

Mf_track (class in nimfa.models.mf_track) MFError min() (in module nimfa.utils.linalg) min_residuals (nimfa.models.nmf.Nmf attribute) multiply() (in module nimfa.utils.linalg)

N

n_iter (nimfa.models.mf_fit.Mf_fit attribute) (nimfa.models.nmf.Nmf attribute) n_run (nimfa.models.mf_fit.Mf_fit attribute) (nimfa.models.nmf.Nmf attribute) negative() (in module nimfa.utils.linalg) nimfa.datasets (module) nimfa.examples (module) nimfa.examples.all_aml (module) nimfa.examples.cbcl_images (module) nimfa.examples.documents (module) nimfa.examples.gene_func_prediction (module) nimfa.examples.medulloblastoma (module) nimfa.examples.orl_images (module) nimfa.examples.recommendations (module) nimfa.examples.synthetic (module) nimfa.methods (module) nimfa.methods.factorization (module) nimfa.methods.factorization.bd (module) nimfa.methods.factorization.bmf (module) nimfa.methods.factorization.icm (module) nimfa.methods.factorization.lfnmf (module) nimfa.methods.factorization.lsnmf (module) nimfa.methods.factorization.nmf (module) nimfa.methods.factorization.nsnmf (module) nimfa.methods.factorization.pmf (module) nimfa.methods.factorization.pmfcc (module) nimfa.methods.factorization.psmf (module) nimfa.methods.factorization.sepnmf (module) nimfa.methods.factorization.snmf (module) nimfa.methods.factorization.snmnmf (module)

nimfa.methods.seeding (module) nimfa.methods.seeding.fixed (module) nimfa.methods.seeding.nndsvd (module) nimfa.methods.seeding.random (module) nimfa.methods.seeding.random_c (module) nimfa.methods.seeding.random_vcol (module) nimfa.models (module) nimfa.models.mf_fit (module) nimfa.models.mf_track (module) nimfa.models.nmf (module) nimfa.models.nmf_mm (module) nimfa.models.nmf_ns (module) nimfa.models.nmf_std (module) nimfa.models.smf (module) nimfa.utils (module) nimfa.utils.linalg (module) nimfa.utils.utils (module) Nmf (class in nimfa.methods.factorization.nmf) (class in nimfa.models.nmf) Nmf_mm (class in nimfa.models.nmf_mm) Nmf_ns (class in nimfa.models.nmf_ns) Nmf_std (class in nimfa.models.nmf_std) Nndsvd (class in nimfa.methods.seeding.nndsvd) none() (nimfa.methods.factorization.sepnmf.SepNmf method) norm() (in module nimfa.utils.linalg) normalize() (nimfa.methods.factorization.bmf.Bmf method) Nsnmf (class in nimfa.methods.factorization.nsnmf) nz_data() (in module nimfa.utils.linalg)

O

objective() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method)

options (nimfa.models.mf_fit.Mf_fit attribute) (nimfa.models.nmf.Nmf attribute)

P

plot() (in module nimfa.examples.all_aml) (in module nimfa.examples.cbcl_images) (in module nimfa.examples.documents) (in module nimfa.examples.gene_func_prediction) (in module nimfa.examples.medulloblastoma) (in module nimfa.examples.orl_images) Pmf (class in nimfa.methods.factorization.pmf) Pmfcc (class in nimfa.methods.factorization.pmfcc) power() (in module nimfa.utils.linalg) predict() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method)

preprocess() (in module nimfa.examples.cbcl_images) (in module nimfa.examples.documents) (in module nimfa.examples.gene_func_prediction) (in module nimfa.examples.orl_images) print_info() (in module nimfa.examples.synthetic) Psmf (class in nimfa.methods.factorization.psmf) purity() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method)

Q

qr() (nimfa.methods.factorization.sepnmf.SepNmf method)

R

Random (class in nimfa.methods.seeding.random) Random_c (class in nimfa.methods.seeding.random_c) Random_vcol (class in nimfa.methods.seeding.random_vcol) rank (nimfa.models.nmf.Nmf attribute) read() (in module nimfa.examples.all_aml) (in module nimfa.examples.cbcl_images) (in module nimfa.examples.documents) (in module nimfa.examples.gene_func_prediction) (in module nimfa.examples.medulloblastoma) (in module nimfa.examples.orl_images) (in module nimfa.examples.recommendations) reorder() (in module nimfa.examples.all_aml) (in module nimfa.examples.medulloblastoma) repmat() (in module nimfa.utils.linalg) residuals() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) (nimfa.models.smf.Smf method) rmse() (in module nimfa.examples.recommendations) rss() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) run() (in module nimfa.examples.all_aml) (in module nimfa.examples.cbcl_images) (in module nimfa.examples.documents) (in module nimfa.examples.gene_func_prediction) (in module nimfa.examples.medulloblastoma) (in module nimfa.examples.orl_images) (in module nimfa.examples.recommendations) (in module nimfa.examples.synthetic) run_bd() (in module nimfa.examples.synthetic)

run_bmf() (in module nimfa.examples.synthetic) run_icm() (in module nimfa.examples.synthetic) run_lfnmf() (in module nimfa.examples.synthetic) run_lsnmf() (in module nimfa.examples.synthetic) run_nmf() (in module nimfa.examples.synthetic) run_nsnmf() (in module nimfa.examples.synthetic) run_one() (in module nimfa.examples.all_aml) (in module nimfa.examples.medulloblastoma) run_pmf() (in module nimfa.examples.synthetic) run_psmf() (in module nimfa.examples.synthetic) run_sepnmf() (in module nimfa.examples.synthetic) run_snmf() (in module nimfa.examples.synthetic) run_snmnmf() (in module nimfa.examples.synthetic)

S

S (nimfa.models.nmf_ns.Nmf_ns attribute) score_features() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) seed (nimfa.models.nmf.Nmf attribute) seeding (nimfa.models.mf_fit.Mf_fit attribute) select_features() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) SepNmf (class in nimfa.methods.factorization.sepnmf) Smf (class in nimfa.models.smf) smoothing() (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.models.nmf_ns.Nmf_ns method) Snmf (class in nimfa.methods.factorization.snmf) Snmnmf (class in nimfa.methods.factorization.snmnmf)

sop() (in module nimfa.utils.linalg) sort() (in module nimfa.utils.linalg) spa() (nimfa.methods.factorization.sepnmf.SepNmf method) sparseness() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) std() (in module nimfa.utils.linalg) structured() (nimfa.methods.factorization.sepnmf.SepNmf method) sub2ind() (in module nimfa.utils.linalg) summary() (nimfa.models.mf_fit.Mf_fit method) svd() (in module nimfa.utils.linalg)

T

t_model (class in nimfa.models.mf_track) target() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nmf.Nmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.sepnmf.SepNmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method) (nimfa.models.nmf.Nmf method) (nimfa.models.nmf_mm.Nmf_mm method) (nimfa.models.nmf_ns.Nmf_ns method) (nimfa.models.nmf_std.Nmf_std method) (nimfa.models.smf.Smf method) test_conv (nimfa.models.nmf.Nmf attribute) trace() (in module nimfa.utils.linalg)

track_error() (nimfa.models.mf_track.Mf_track method) track_factor() (nimfa.models.mf_track.Mf_track method) transform_data() (in module nimfa.examples.gene_func_prediction)

U

update() (nimfa.methods.factorization.bd.Bd method) (nimfa.methods.factorization.bmf.Bmf method) (nimfa.methods.factorization.icm.Icm method) (nimfa.methods.factorization.lfnmf.Lfnmf method) (nimfa.methods.factorization.lsnmf.Lsnmf method) (nimfa.methods.factorization.nsnmf.Nsnmf method) (nimfa.methods.factorization.pmf.Pmf method) (nimfa.methods.factorization.pmfcc.Pmfcc method) (nimfa.methods.factorization.psmf.Psmf method) (nimfa.methods.factorization.snmf.Snmf method) (nimfa.methods.factorization.snmnmf.Snmnmf method)

V

V (nimfa.models.nmf.Nmf attribute) V1 (nimfa.models.nmf_mm.Nmf_mm attribute)

vstack() (in module nimfa.utils.linalg)

W

W (nimfa.models.nmf_mm.Nmf_mm attribute) (nimfa.models.nmf_ns.Nmf_ns attribute) (nimfa.models.nmf_std.Nmf_std attribute)

X

xray() (nimfa.methods.factorization.sepnmf.SepNmf method)